CDS

Accession Number TCMCG007C17920
gbkey CDS
Protein Id XP_009131933.1
Location 4703442..4704191
Gene LOC103856576
GeneID 103856576
Organism Brassica rapa

Protein

Length 249aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA249065
db_source XM_009133685.3
Definition tRNA-splicing endonuclease subunit Sen2-2 [Brassica rapa]

EGGNOG-MAPPER Annotation

COG_category J
Description Constitutes one of the two catalytic subunit of the tRNA-splicing endonuclease complex, a complex responsible for identification and cleavage of the splice sites in pre-tRNA. It cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3'-cyclic phosphate and 5'-OH termini. There are no conserved sequences at the splice sites, but the intron is invariably located at the same site in the gene, placing the splice sites an invariant distance from the constant structural features of the tRNA body. Probably carries the active site for 5'-splice site cleavage (By similarity)
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko03016        [VIEW IN KEGG]
KEGG_ko ko:K15322        [VIEW IN KEGG]
EC 3.1.27.9        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway -
GOs GO:0000213        [VIEW IN EMBL-EBI]
GO:0000214        [VIEW IN EMBL-EBI]
GO:0000379        [VIEW IN EMBL-EBI]
GO:0000394        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0004518        [VIEW IN EMBL-EBI]
GO:0004519        [VIEW IN EMBL-EBI]
GO:0004521        [VIEW IN EMBL-EBI]
GO:0004540        [VIEW IN EMBL-EBI]
GO:0004549        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006388        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006399        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0008033        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008380        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016787        [VIEW IN EMBL-EBI]
GO:0016788        [VIEW IN EMBL-EBI]
GO:0016892        [VIEW IN EMBL-EBI]
GO:0016894        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0034470        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034660        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0090305        [VIEW IN EMBL-EBI]
GO:0090501        [VIEW IN EMBL-EBI]
GO:0090502        [VIEW IN EMBL-EBI]
GO:0140098        [VIEW IN EMBL-EBI]
GO:0140101        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1902494        [VIEW IN EMBL-EBI]
GO:1902555        [VIEW IN EMBL-EBI]
GO:1905348        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGCGCCAAGATGGAAATGGAAAGGAGCTGAAGCAAAAGCTCTTGCAGAACCTATTTCAAAATCAGTCTCAGAGCTCCAACTCTCTCTAGCCAAAACATCGGGCTCCCTCTCGAGTTGCAACGTACTCCTAGCGGTTGAGCCAGAGCAAGCTGAGCTGCTCGACCGCTGTTGTTTCGGCAGACTCGTCCTATCCGCTGAGAAAGTCAAGAAATGGATTCAGCTATCCTTCGAAGAGGCTTTTTACTTGTTCTACATCCTCAAATGCATCAAACTCACCCTTCAAGGCCGTTGCTTGGAGAACGAAGTCGACACGTGGATGTACATGAGATCAAAAAGACCAAACTTCCCGGTGTTCTTCAAAGCTTATTCACATTTACGATCCAAGAACTGGGTTTTGAGATCCGGGTTGCAGTACGGTGTGGATTTCGTGGCGTACCGTCATCATCCTTCTCTTGTCCACTCTGAATACTCCGTTTTGGTTCAGTCTGGTGACAGTGATCGGTTAAGAGTGTGGTCTGATGTCCATTGTGCTGTTCGGTTAAGCGGAAGTGTTGCTAAAACGTTGTTAACTCTCCATGTCAGTGGTAACTCTAACAGAGAGGATTTGAATCTACCTACGTGTTTGGAGAACTACAGAGTTGAAGAGCAAACGATAAGTAGATGGAGCCCAGAACTCAGTCGTGAAGATGATGAAACCACAAGTCCAAAACCAAAAGTTACCAATGTGAGTAATTTGAAAACGCCATGA
Protein:  
MAPRWKWKGAEAKALAEPISKSVSELQLSLAKTSGSLSSCNVLLAVEPEQAELLDRCCFGRLVLSAEKVKKWIQLSFEEAFYLFYILKCIKLTLQGRCLENEVDTWMYMRSKRPNFPVFFKAYSHLRSKNWVLRSGLQYGVDFVAYRHHPSLVHSEYSVLVQSGDSDRLRVWSDVHCAVRLSGSVAKTLLTLHVSGNSNREDLNLPTCLENYRVEEQTISRWSPELSREDDETTSPKPKVTNVSNLKTP